rs50062009 SNP Detail

Summary

• ID
  rs50062009
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89339997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC CCCAGGAGGT GGCGCGTGCC
  R
  GGATGCCTAA GCTCAGAGGA CGACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133372185	ENSMUSSNP999507	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss321852059	CHEV_6_89313009	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50062009					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89339997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17713	CpG island 17713	within coordinates
Plxna1	plexin A1	402 bp upstream
Rr146639	regulatory region 146639	within coordinates
Rr152199	regulatory region 152199	1310 bp proximal
Tssr57621	transcription start site region 57621	1601 bp upstream
Tssr62008	transcription start site region 62008	441 bp upstream
Tssr62009	transcription start site region 62009	378 bp upstream
Tssr62010	transcription start site region 62010	564 bp downstream
Tssr62011	transcription start site region 62011	1369 bp downstream
Tssr62012	transcription start site region 62012	1480 bp downstream