rs50063520 SNP Detail

Summary

• ID
  rs50063520
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127656014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGAATG GGGAGAGAGG
  GGGCAAGAGA AAGCAAGAGA GCAAGAGAGG AGCAAGAGAG TGAGGAGGGG GCAAGCAGCC
  CCTTTTAAGG TGGGGTAGGG CCTACCTTTC TTGTTGCCAG GTAACTGTGG GGCAGAACTT
  TGACAATTGG TATGGGAGGG ATTTTTTTTT TTAAAATATG ACAATACTAT TTTGAGTGGG
  R
  AGTGAACCTG GTGCAATCAT GTTTAAGTGG TGAAGCGTCT CAGTTGGTCA TTTAAAGTGT
  CATCGACACT AATGGATTAG GTTTGTAACT TTTACTTTGA TGACATGTTA CAGGTTCTCT
  TTCTGATCCT ATAAACATAC CATAGTACTT TTGGCATATG TCACACAGTA GAGGTTAGAA
  ATGTTTTCAG GATGGCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957614	CHEV_3_127565283	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs50063520					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127656014 () rs orientation: forward

Symbol	Name	Function Class
Gm35585	predicted gene, 35585	within coordinates
Gm43652	predicted gene 43652	819 bp downstream
Rr584887	regulatory region 584887	675 bp distal
Rr584888	regulatory region 584888	148 bp proximal
Tssr31614	transcription start site region 31614	750 bp downstream