rs50063564 SNP Detail

Summary

• ID
  rs50063564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164793988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTAGTTGA TTTATATTTC
  TATGGGTGTT TTGCCTGAAT GTATGTGCAC AAGGTATGTG CAATGCCAGC AGAGGCCAGA
  AGAGGGCGTC AGATCACTTA GGACTGGAGA AGCAGATTGT TGTTAGCTGC CATGTGGGTA
  TTGGGAAATG AACCCAGGTC CTCTGGAAGA GCAGCCAGTG GTCTTAATTA ACTATTGAGC
  Y
  ATGTCTTCAG CCCCCAAAGG AGCTTTTAAA GGCATAGCAG GCCAGGAATG TTTGCCCTTA
  GGAGTCAGAG GCAGCTCACA GCACTGTTTG ACACAGTGGT CACCCAAAAG ACTCTCTCCC
  TGCCTGACTC GGGGAAGGGA GGGACATTCT GCCTGTTCGG TCCTGAGAAC CCAGTCCATA
  TCTTCACAGA GCTCAGTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148233685	ENSMUSSNP3121071	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50063564					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164793988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1569 bp distal
Cpgi12680	CpG island 12680	827 bp distal
Cpgi12681	CpG island 12681	1046 bp proximal
Mmp9	matrix metallopeptidase 9	Intron
Rr569776	regulatory region 569776	108 bp distal
Rr569777	regulatory region 569777	555 bp proximal
Rr569778	regulatory region 569778	1362 bp proximal
Tssr21691	transcription start site region 21691	907 bp downstream
Tssr21692	transcription start site region 21692	847 bp downstream
Tssr21693	transcription start site region 21693	355 bp upstream