rs50063777 SNP Detail

Summary

• ID
  rs50063777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29266603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCTTGCA GAGATTACAG
  CTTGTGCCAC CTTGCCACCA TTCAGAGATG GTTTTGAGTG TCAAGGATAA TTTGAGGTAG
  AAGGTTTTTT GTTTAACCCT TTCTTACCAG CACAGGAATC AGGAGGTGAA GACTAGTTAA
  TCCTGACAAG CCTGGTGGGG CTGAGCTGAG CAGCCACCAA CTCAGGGTAC CTGAGGCCCA
  Y
  CACCTTGAGT GTGTATGGCC TAGGGAATAC AGGTCAGCCA CAAAACATAG TTACTTCCAA
  TATTAAAACA GAGCCAGCAA ATTACCACCT TCTAGACTAT GAGATGACCC AGTTCCTAAC
  ACATTAGCAT TCAAGGTGCT CTACCAACGT GGCTTGGTAG AGTGCTTGCT TAGCATGCAT
  GAGGCCTTAG GTATCATCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559283	NES16575655	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50063777					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559283	NES16575655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29266603 () rs orientation: forward

Symbol	Name	Function Class
Rr524769	regulatory region 524769	969 bp distal
Rr524771	regulatory region 524771	467 bp distal
Rr524772	regulatory region 524772	530 bp distal
Rr524773	regulatory region 524773	93 bp proximal
Rr524774	regulatory region 524774	547 bp proximal
Rr524775	regulatory region 524775	970 bp proximal
Rr524776	regulatory region 524776	1709 bp proximal
Rr524777	regulatory region 524777	1888 bp proximal
Tssr143492	transcription start site region 143492	411 bp downstream