rs50064243 SNP Detail

Summary

• ID
  rs50064243
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4538268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATACGCCA ACCTTTCCAA
  AAATCTATGT CCATTGATCT TTAGAACAAA CACGTATTTG GGCCCAAAAA TTCTACACTA
  TCAAAACTTA TACCGAGTTA ATGAAACATC ACTTTCTTCC TCTGCCCACA TCCACCCTTA
  AGTCTGTTTA GTTGTTTATC TGTTTACTAC CAGGACTAGG GATTAAATAT CAGGCCTTAG
  R
  CATGCTAAGA AAATGTCTAA CACAGAGCTC CATCCTCAGG CCACGTTCTA CACTTTATTT
  TAAGACCAGC TCTCACTACA CTGGCCTTGA ATTCACTCTA GTCTTAGTGG GTCTCTTAAG
  TATTGATTCT CCTGCCTCAG GTGGTCTAAA CATCCTGGTT GGATGTTTCA TCAAGTAAAA
  GGGGACTCTT AAAAATAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss132932201	ENSMUSSNP3405005	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50064243					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4538268 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	within coordinates
Tssr1769	transcription start site region 1769	288 bp downstream
Tssr1770	transcription start site region 1770	387 bp upstream
Tssr54726	transcription start site region 54726	470 bp downstream
Tssr54727	transcription start site region 54727	389 bp downstream
Tssr54728	transcription start site region 54728	312 bp downstream
Tssr54729	transcription start site region 54729	258 bp downstream
Tssr54730	transcription start site region 54730	348 bp upstream
Tssr54731	transcription start site region 54731	403 bp upstream
Tssr54732	transcription start site region 54732	423 bp upstream
Tssr54733	transcription start site region 54733	1199 bp upstream
Tssr54734	transcription start site region 54734	1210 bp upstream
Tssr54735	transcription start site region 54735	1224 bp upstream
Tssr54736	transcription start site region 54736	1248 bp upstream
Tssr54737	transcription start site region 54737	1270 bp upstream
Tssr54738	transcription start site region 54738	1308 bp upstream
Tssr54739	transcription start site region 54739	1323 bp upstream
Tssr54740	transcription start site region 54740	1387 bp upstream
Tssr54741	transcription start site region 54741	1738 bp upstream