rs50064486 SNP Detail

Summary

• ID
  rs50064486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164266209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTTGCC GTAGTAGGGA
  TAATACTGCA GAGGGAAGCC GTAGTATCCG CCCATCCCAA AGTACTCTAT GTTCCCGACT
  TTATCCTTAT CTTCATCTCT CTGGAAACCA AAAGGACATG AAATTTAATT TTAAGGGCAT
  ACACGCATCA TGGGTCTCGT CTTGCTCTAA CGAACGAGAC TCTCAACCCC ATCAGAGGCT
  R
  CAGTGGCGTG CCTACCTCAA ACCTCTCAGA AGCTAAGCCT ATCAAGCAGT GGGTGGCGTG
  GATTGGTGAC ACCACAGGAT AAAGGTCGGT TCTGGCCGAA AGCAGCCAAG AAGCATTCAC
  GAAAGGGGGC TCTGCAAATG GAGACACTGA GGCAGAGACC AAGTAAGTGA TTCTCTAAGC
  TGGCTCAGCC TCGCAGGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60337251	NES15839907	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50064486					SNP	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60337251	NES15839907	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164266209 () rs orientation: forward

Symbol	Name	Function Class
Atp1b1	ATPase, Na+/K+ transporting, beta 1 polypeptide	within coordinates
Nme7	NME/NM23 family member 7	1339 bp downstream
Tssr9784	transcription start site region 9784	133 bp downstream
Tssr14731	transcription start site region 14731	1215 bp upstream
Tssr14732	transcription start site region 14732	880 bp upstream
Tssr14733	transcription start site region 14733	781 bp upstream
Tssr14734	transcription start site region 14734	736 bp upstream
Tssr14735	transcription start site region 14735	682 bp upstream
Tssr14736	transcription start site region 14736	641 bp upstream
Tssr14737	transcription start site region 14737	581 bp upstream
Tssr14738	transcription start site region 14738	445 bp upstream
Tssr14739	transcription start site region 14739	261 bp upstream
Tssr14740	transcription start site region 14740	220 bp upstream
Tssr14741	transcription start site region 14741	143 bp upstream
Tssr14742	transcription start site region 14742	101 bp upstream