rs50065556 SNP Detail

Summary

• ID
  rs50065556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:109077542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATTATC ATTTTAGTTT
  ATGATTTAGA TGGCCCAGAC ACTCCTAGAA TTAAATATTA TTTGAGATGA TTATGTATTT
  ATTACATGTA GAATGTCTAA CTATGATGCA TGGAATCATT AGCACAGCTA CATAATATCA
  GTCATCTAGA GAAGCTGGCA TTGTCTCAAA TATGCCACTC ATTTTTATTA TTTCAGTTAT
  R
  CAACTAGTTT ATATTTGATG TTTTTATAAA AAACAATATA GAACTTCTAA TCTCTTTTCT
  GTCACAACAT TTGGGTCCTT ATCTTACACT GCTTTCAGGT CAAGATACAT TCATATTTCA
  AAATGATAGT TATAAACATT TGTATGCTAT TTTTTAACTA TATCATAGAA AGAATTTGGG
  ATTTTCCCTG TATTCTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146796915	ENSMUSSNP172926	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324806630	CHEV_14_109239327	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50065556					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:109077542 () rs orientation: forward

Symbol	Name	Function Class
Tssr130175	transcription start site region 130175	1921 bp downstream