rs50066317 SNP Detail

Summary

• ID
  rs50066317
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:99663230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTTTAGAG ATTACATGAA
  TCTCAGAAGA GACTTTAAAA AAAAGGTTTA TGTATTTATT TTATTTATGT GAGTACACTG
  TAGCAGTCTT CAGACACACC AGAAGAGCGC AACAGGTTTT ATTACAGAAG GTTGTGAGCC
  ACCATGTGGT TGCTGGGAAT TGAACTCAGG ACCTCTGGAA GAGCAGTCAG TACTCTTAAC
  T
  GCTGAGCCAT CTCTCCAACC CAGAAGAGAC TTTTAACATT GTTGAGACTG TTATAGACCA
  TGAGACTTTT GAAGTTGGAC TAAACTTATT TTGCATTAGG CTATGCCTAG GTGTGGCCTC
  CATAGATTCA CACATTTGAA CAAGCTTATT GGGACCAGGA TGGAATGTGG TGGTTAGAAT
  ATGCTTGGCC CAAGGAGTAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148470412	ENSMUSSNP2522932	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50066317					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:99663230 () rs orientation: forward

Symbol	Name	Function Class
Cers5	ceramide synthase 5	within coordinates
Gm17058	predicted gene 17058	642 bp upstream