rs50066414 SNP Detail

Summary

• ID
  rs50066414
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156267729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTCTGGA GGCAGAGGTA
  GGCAAATCTC TGAGTTCCAG GCCAGCCTGG TCCATAGAGT GAGTTCTAGG ACAGTGATAG
  TTACATAGAG AGACCCTGTT TCAAAATACA AAACACAAAA ACCAAACCAA ACACGCAAAA
  GAACGCAACA GGGAAGAACA GCCTGGCCTG TTGGCTCCTA TTTTTCTTCC TGGTCTACTA
  S
  GATGACTTGT TTTTCACGCT ATCGCCCAAT TACTGCCAAT CTCTCTAAGC CATTCCTGTG
  ACTAAGATAA AAATTCCTGA GTGGGAAACA AGGGTTTGCA AGGTAAGCAG ACACAGTGGG
  GTGAGGCTAT TAACATTCCA TGGATGCTCA GTTACAAGAG TCTGAGGATA ATTGTTTTCA
  TTGTAGAAAA AAGGACAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60329455	NES15835609	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50066414					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329455	NES15835609	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156267729 () rs orientation: forward

Symbol	Name	Function Class
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	445 bp downstream
Tssr14442	transcription start site region 14442	840 bp upstream
Tssr14443	transcription start site region 14443	1223 bp downstream
Tssr14444	transcription start site region 14444	1241 bp downstream