rs50067590 SNP Detail

Summary

• ID
  rs50067590
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125200785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTAGCCC CCCACTTTAC
  TTTTGATAAC AGACATCATA ATTCATGGTC TTTATAGGCT CGGATGCACT GTATCCATAA
  GGTATTTCAT AGCAGTGAGC ACAAGGAAGC TCTCGTGCAG CTGAGGGAGT GTTGTATAAC
  TCTCCCAAAA CTCCTGGCAG CTGTCTGAAG GGTCAGAACC CTAATATCTG ATGATGTAAC
  S
  GTGCAGATGT AGCCCAGGGC CTCTGCTTCG TACCTTGAAA CAACGAGTTG GGAGTTGGAG
  CAGCTAGGAA TGTTTTGGAA CCAACAGGGA GAGAGAGAAG AAAGTGCGCT GTAGTCACAG
  CATGTTTTTA TTTTGACAGT GTTGGCATTC ATGAGTGGTC ACAGCCTCTC CCGCTTCCCT
  CACTTTGATC CTTTTTCTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60940110	NES16188522	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50067590					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940110	NES16188522	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125200785 () rs orientation: forward

Symbol	Name	Function Class
Rr133010	regulatory region 133010	185 bp distal
Rr133011	regulatory region 133011	416 bp proximal
Rr133012	regulatory region 133012	1816 bp proximal
Rr142739	regulatory region 142739	1960 bp proximal
Rr147527	regulatory region 147527	within coordinates
Rr368188	regulatory region 368188	1334 bp downstream
Tapbpl	TAP binding protein-like	111 bp downstream
Tssr58934	transcription start site region 58934	1981 bp downstream
Tssr58935	transcription start site region 58935	1919 bp downstream
Vamp1	vesicle-associated membrane protein 1	1516 bp downstream