rs50067608 SNP Detail

Summary

• ID
  rs50067608
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31207354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGGCTT CATTTAAAAT
  AGTTTTATTA TTAAGTCTTT GTATTATTTT TACTAAAATA CATTTAAATT TTTCTTCATT
  TTATTTTTTT GTTTTTAATT GTGTCTGTCT GTCTGTCTGA CTGTCTGGGT ACAGGCACTT
  GAGTGCAGGT GCTGGAAAAT TTCAGAGGCC TTGGATCCTC CTGGAGCTGG AATGATAGGC
  R
  GTTGTGAGAT ACAGTGTGGG TACTGGGAAC TAGACTCAGG TCTTCTGTAG GAGCAATACT
  GGCTCTTAAC TGCTAAGCCA TCTTTCCAGC CTTTAATTTT TTTTTTTCCT TCTTCTTCTT
  ATTGTTGTTC TGGGTACTAG GAAATGAACC TAGGACTTTA TGCAAGCTAC CTTTTTTGGA
  TTTGCTTTTC CTTTTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148191037	ENSMUSSNP3039060	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50067608					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31207354 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	within coordinates
Cpgi15696	CpG island 15696	1127 bp distal
Rr112650	regulatory region 112650	447 bp proximal
Rr112651	regulatory region 112651	1647 bp proximal
Rr125009	regulatory region 125009	153 bp distal
Rr399020	regulatory region 399020	1255 bp downstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	1086 bp upstream
Tssr45658	transcription start site region 45658	1337 bp downstream
Tssr45659	transcription start site region 45659	976 bp downstream
Tssr50523	transcription start site region 50523	1972 bp upstream
Tssr50524	transcription start site region 50524	1734 bp upstream