rs50068083 SNP Detail

Summary

• ID
  rs50068083
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGCAGTT AATAGCTGCA
  TGTGGCTATT GAAGATTTAA CATTTGGAAC TGAATTTTAA ATTTTGATTA AGCTTTAATG
  TAAATAACTA CATGTGGCCA CTGTATTGTA CAAGGTACTT TAAAGGTACA TCGCTATTTT
  GTGCAATTAA CTCAGTAATA TTTATCTTAA ACACCATAGA GGCAGTAATT AGGCTCATAC
  W
  CTAGGACTGC ATGTGAAAAG TCTTGACGGT CAAGCCTTAC TAACATGCAT TAATTTTTAA
  AACAATAAAA ATCCCTTTGT GGAGCCAATT TACATTCCCG AGTTCCCTGC CTTTGCTGGA
  AAGTTCAGGT GAGGGCGAGC ACACATAACT GCATGTGTTC TGATAATTAC AATTCATCCG
  AATTTGTAGT TCCCATTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61262564	NES16880288	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50068083					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262564	NES16880288	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790446 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	659 bp downstream
Med23	mediator complex subunit 23	1088 bp downstream
Tssr92746	transcription start site region 92746	1072 bp upstream
Tssr92747	transcription start site region 92747	1145 bp upstream
Tssr97085	transcription start site region 97085	944 bp downstream
Tssr97086	transcription start site region 97086	990 bp downstream
Tssr97087	transcription start site region 97087	1024 bp downstream
Tssr97088	transcription start site region 97088	1082 bp downstream
Tssr97089	transcription start site region 97089	1101 bp downstream
Tssr97090	transcription start site region 97090	1132 bp downstream
Tssr97091	transcription start site region 97091	1523 bp downstream
Tssr97092	transcription start site region 97092	1543 bp downstream
Tssr97093	transcription start site region 97093	1567 bp downstream
Tssr97094	transcription start site region 97094	1583 bp downstream
Tssr97095	transcription start site region 97095	1597 bp downstream
Tssr97096	transcription start site region 97096	1862 bp downstream