rs50068810 SNP Detail

Summary

• ID
  rs50068810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30738365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTTAAA AATGGGTCAA
  TGAAAAAGAG ATTTTTGTTT TTAAGTCAAT GGGATTGGGT GTAGATAGAC ACAGGCAGCA
  CATTCTGCAA TGCCAACACT CCAGAGGCTG AGGCAGAAGG ATTGCCCTGA GTTTTAGGCT
  ACCCTGGGCT ACAAAATAGT AATGTCTGGA CAAAATAAGT AAGGGATAGA GTGCAGCTGG
  Y
  AAGGGTCTAG AGCTGGGGTG TGCTGGAGGG AGTGAGGACC AGCAGCTGTC AGGGGTAAGG
  ATGCAAGTGT GGGTTCTGCC CCTCCCCCTC CACTCACCTT CTCTGGTCCA GATGAGAGGG
  GTGGTCTGGA CTCCTGGGCT GGTTTGATCT GGATCTGGGG TAAAAACAGG GTCAGAGAGA
  GAAGTGAGAA GGGAGCAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60989524	NES16136105	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50068810					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989524	NES16136105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30738365 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1627 bp downstream
Mir7050	microRNA 7050	1318 bp downstream
Rr368303	regulatory region 368303	1530 bp upstream
Rr644981	regulatory region 644981	1941 bp distal
Rr644982	regulatory region 644982	1645 bp distal
Rr644983	regulatory region 644983	1404 bp proximal
Tssr65831	transcription start site region 65831	1932 bp downstream
Tssr65832	transcription start site region 65832	1523 bp downstream
Tssr65833	transcription start site region 65833	1084 bp downstream
Tssr65834	transcription start site region 65834	1053 bp downstream
Tssr71892	transcription start site region 71892	1846 bp upstream
Tssr71893	transcription start site region 71893	1073 bp upstream
Tssr71894	transcription start site region 71894	1050 bp upstream
Tssr71895	transcription start site region 71895	1021 bp upstream
Tssr71896	transcription start site region 71896	991 bp upstream
Tssr71897	transcription start site region 71897	119 bp downstream
Tssr71898	transcription start site region 71898	1268 bp downstream