rs50070457 SNP Detail

Summary

• ID
  rs50070457
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54043425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTCCTGTG CAGAGCGGTT CTCCCACTCA CTCCACAAGG
  CTAGCGTCAC TGTTTGCACT TCTTTCTTTT TCCTTCACTA ATAAGATGTG CAATAAAAAA
  W
  AAAAGTGCCG CAGATTTCCT GGGAGGCCTA TAGACTGTTG GGTCTTCAGA GGAGCAGACA
  AGCTGGTGGT CTGTGACCTT ATGAAACCTA GTTAGCTCTA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62397070	NES17240645	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50070457					SNP	A	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62397070	NES17240645	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54043425 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
A630038E17Rik	RIKEN cDNA A630038E17 gene	within coordinates
Rr492108	regulatory region 492108	1296 bp distal
Rr492109	regulatory region 492109	1525 bp distal
Rr492110	regulatory region 492110	216 bp proximal
Rr492111	regulatory region 492111	430 bp proximal
Tcra	T cell receptor alpha chain	within coordinates
Trav17	T cell receptor alpha variable 17	671 bp upstream
Tssr125501	transcription start site region 125501	495 bp upstream
Tssr125502	transcription start site region 125502	529 bp upstream