rs50070530 SNP Detail

Summary

• ID
  rs50070530
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24099276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTCGTT GGGCTGCGTA
  CTGTGGCTTC CTCTTCTTCC TCCTCTGGGA GCTTCCGGGA CGCCAAGGCC TGTTCCGGAA
  TAGCCGGCAC CCGTTTTCTC GGCCTCTCTC ATTCTCTGGC TTGTGACCTT CCGGCACCAT
  TTACACGGCA GGTGGCTGTG GAGGACCTTC CCCGCCCACG CTGCACTCCC GTCACTCAGA
  S
  CGCGCGCTGC GACCCAGGAA CTAATCAGCA GCTGCCCTAG GTAAGGGGAA GGGGGGACGC
  CCCGAGCCTG GGAGAGGCAG GCGCGCCGAC GGGGCGGGGT TGGGGGTGGG GCGTATTCAA
  GCCCCGCCCC CGCCCTGCCG TTAAAAGGTC GCTGGGCGGC TGGCCAATGG GAGTAGGAAC
  GTGAAGGTCT CGGAATTGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60983364	NES16154573	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs50070530					SNP	G	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60983364	NES16154573	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24099276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18537	CpG island 18537	within coordinates
Gm74022	predicted gene, 74022	within coordinates
Rr643436	regulatory region 643436	1602 bp distal
Rr643437	regulatory region 643437	222 bp distal
Rr643438	regulatory region 643438	within coordinates
Rr643439	regulatory region 643439	74 bp proximal
Rr643440	regulatory region 643440	722 bp proximal
Smg9	SMG9 nonsense mediated mRNA decay factor	within coordinates
Tssr64959	transcription start site region 64959	178 bp downstream
Tssr64960	transcription start site region 64960	124 bp downstream
Tssr64961	transcription start site region 64961	33 bp downstream
Tssr64962	transcription start site region 64962	108 bp upstream
Tssr64963	transcription start site region 64963	126 bp upstream
Tssr64964	transcription start site region 64964	162 bp upstream
Tssr71075	transcription start site region 71075	7 bp downstream