rs50073726 SNP Detail

Summary

• ID
  rs50073726
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89843045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTATGTA AGTTGTCAAA
  ATAACAGTGT ATTATATATG TTAGTATGGG TCATCTCTTA TGATATCTTA CTTAAGATAT
  TTGTGTGTAT ATGATAGTTT ATTTTTTGAT GACTAACGTG TGGGGCCTGT GATGTGACTC
  ACTAAGAATA AACTGCTGCT TATGGTGTTT TGTTTTTTTT TATATTTCTA ACCTTTTGAT
  K
  AATTCTTAAA CACTGTCAAG GTTTTTAATT TTTTAAATTG TAAATAAATA CACTTATTTT
  ATCAAAATAT TTGTTATGCC ACAACCTCTT TTCAATGATG GTCCTGCCCT GGTGGTAGAC
  ATGTGGTGTC ATGTTATTTT GAGGATGCCC TTGAATTTTC CTTACTAATG TCACTATGTA
  TTTTGTTTTA AATACATTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61031559	NES16092948	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50073726					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031559	NES16092948	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89843045 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67742	transcription start site region 67742	499 bp upstream
Tssr67743	transcription start site region 67743	1615 bp upstream