rs50074068 SNP Detail

Summary

• ID
  rs50074068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81336053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACAGAA AGCGTGCCAT
  AGGCAGAGGC AGGCGGATTT CTGAGTTCGA GGCCAGCCTG GTCTATAAAG TGAGTTCCAG
  GACAGCCAGG GCTACACAGA GAAACCCTGT CTCGAAAAAC CAAAAAAAAA AAAAAAAAGG
  AAAAGACAGA ATGTCATAAA TGTTTGTCAC TTGTATACAC CAGCCAAGCC TTAATCAATG
  Y
  CATCCAAACA CATCAAGTAC CACCCATGCA TAACAGGTGC TTAATATCTT TTTAGAATTT
  TTGTTACATT TATTGATTGA CTGTGTGTGT CCTTTCATGT GCTGGGGTCA GAGGGCAACT
  CACAGGAGTC CATTCTCCCC TTCTACCATG TGGGTCCTTA GAGCTTTGCC TCAGGCACCT
  TTACCCCTGA ACTGTTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292394	NES16908707	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50074068					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292394	NES16908707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81336053 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1994	CpG island 1994	593 bp distal
Rr435688	regulatory region 435688	797 bp distal
S1pr4	sphingosine-1-phosphate receptor 4	87 bp upstream
Tssr98631	transcription start site region 98631	611 bp upstream
Tssr98632	transcription start site region 98632	576 bp upstream
Tssr98633	transcription start site region 98633	549 bp upstream
Tssr98634	transcription start site region 98634	506 bp upstream