rs50074424 SNP Detail

Summary

• ID
  rs50074424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:73993967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAATACCA GTGCTCTCAA
  GTGAGGAGTC CAAGGACTGA GCTCAGACTT GTTGCTAGGG AGAAAAACCC TAGGCTTGAC
  AGCTAAGGGG AAGGGCCAGT CTAAATGCTC TCCCATGGCA TGAACAGGTT CCCAGAGACC
  AGCTCCAATA ACGTGCATCT GAGAGCCAAG CTGTGTAGAA GCATCAACTG GCCACCAAAA
  R
  TTCCTCAGCA AATGTAAGTG GTAGCAAAAT GGACCTGGGT GGGCAGCACT GGATGTCTGG
  TCTGGCCTCC TCTACTAGAG ATGGACATCA TGTAACTGTT TGAATCTCCA CACTGGACCC
  ACAATACCTC AGCATACCCG CTTTTACAGC TACAGTAGAT CCGCTCAGAA AGCACACATC
  CAAACTCTAG TACATATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61845046	NES17772383	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs50074424					SNP	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61845046	NES17772383	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:73993967 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5855	CpG island 5855	613 bp proximal
Gm30303	predicted gene, 30303	1793 bp upstream
Nkd2	naked cuticle 2	within coordinates
Rr482617	regulatory region 482617	1754 bp proximal
Rr482618	regulatory region 482618	1883 bp proximal
Tssr123198	transcription start site region 123198	1755 bp downstream