rs50076177 SNP Detail

Summary

• ID
  rs50076177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:159116283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATAAAG GGCTGAAAAT
  AGACACACAT CTGACTCATC AAATGGTCAT ATAGGTTTAC AAGCTAGAGC AAATCTGTAT
  TTGGCAAATT TATCAGCAAG CAAAGCATTT GAATTTTCTT ACTTTAACTT TTTTTTAATG
  AAAAAAGAAA CCCAGAAATT TCCTCCCTTT CCTTCCTTTC ATGACATAAA TCATGGAAAA
  Y
  ATTGACCACT TTCATGGGAA AAAATCCTGA TCATATTTAT TCTTTGCTCA GAACAGGGTT
  TAAATAAAAT GGCCCATCAG AACCCATTGC TTCTTCTCTC CTCACATTTG ACCTGGGGAA
  ACATTACTTA CTTGGTTAGT GGAGATGGAG TTGAGAAAAA CAAACCTACT TTCATTCTTT
  TTAATAGCTG AGTAGTACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134520456	ENSMUSSNP1546671	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50076177					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:159116283 () rs orientation: forward

Symbol	Name	Function Class
Gm39548	predicted gene, 39548	within coordinates