rs50077654 SNP Detail

Summary

• ID
  rs50077654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12327996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTTTAC TTCTCTTGGA
  AGGAAGGATG AGAGGATGGG CCAGAGAGCT TTATAGTTAG AGAGACTGGA CATCCTGTCC
  TCATCTTAAA TGACAGGAAG TTGGGTGAGG TGAACTTGCC ATGCAGTCAG CAGGGACCTC
  CCTGGGCCGG GAGGCAGGTC TCACTTCCAC CTCTCCAAGC CTGGGCTGCA CAGTGGCCAC
  Y
  GCAGTTGACA TTGGCTTCCT AGGGAACCCT TGCTTTCAGG GAGGTGGGGA CACCTTCACT
  GGGTGGTGAC CATGGAAGAC AGGCACCTGT GTCACAGAGA GCTCCTCAGA GGGGAGAGTA
  AGAGGTAGGG TCATACCCTG GCTTACTCAG AGCCCAGCTG CATTTGAGCC CAGTTGTTGT
  GTTCTTTTGT GTCATTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60572193	NES16031342	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50077654					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572193	NES16031342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12327996 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	829 bp upstream
Rr659697	regulatory region 659697	563 bp proximal