rs50078063 SNP Detail

Summary

• ID
  rs50078063
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73358977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCAGGA GGGATAAGGA
  AGAGAAAAAG GCTCCTAAGA GGAAGACCCC AGCAGTGAGA TGCAAGATGG TAAAGCTAGA
  GGCCGGGGAA CAGAGCCCTG TGTGAATAGC AGGCTCGGAG CTGGGGTAGA GACTCAGGTG
  GACAGTCTCC CATGAGAATA ACAAGCCCTT TGAGGAAGCT GGAGAGATGA GTACCCCTGA
  K
  GTTGGTTGTG TCAGAGAGAC AAGATGTCTG TTGTTGAGCA TCGGGATTTG GATGGGGCTG
  GGATAGAGGG AAGAAGTCCA GCGTTGGCTG AGGAGCCTGG GTCTGTCTCT TCACCTCTTC
  CCTGGTTGGG CTGGCTTGGA GGATGTGGGA GCTTCTTCTC TCAGGTGCCT GCTGCTGAAG
  GCTGTGACTC TGCAGACAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148110633	ENSMUSSNP3263700	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50078063					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73358977 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	630 bp distal
Tssr4621	transcription start site region 4621	694 bp upstream
Tssr4622	transcription start site region 4622	756 bp upstream
Tssr131529	transcription start site region 131529	706 bp upstream
Tssr134702	transcription start site region 134702	140 bp downstream
Tssr134703	transcription start site region 134703	180 bp downstream
Tssr134704	transcription start site region 134704	195 bp downstream
Tssr134705	transcription start site region 134705	207 bp downstream