rs50083636 SNP Detail

Summary

• ID
  rs50083636
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:20513450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAAAAAA GAAGAAGTGG CAGGGCGCTC TGACTCCTGG
  TCTGCACGGA GTTCAGGAAG TCATCCTCTC CTGTAGTCAG GGAAGAGTGT GACTGACCTC
  W
  GGACTGGCCT TGAGTACCAG GTAGGCGTCT GGCATAGCCA GTAACCTGTT TTCTTTCTGG
  TTGGTAGCAT TTCTGGGGAC CACCAACTGG CTGAGGCCCA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60198411	NES15711483	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50083636					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60198411	NES15711483	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:20513450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8083	CpG island 8083	944 bp distal
Cpgi8084	CpG island 8084	955 bp proximal
Eif4g1	eukaryotic translation initiation factor 4, gamma 1	1817 bp downstream
Fam131a	family with sequence similarity 131, member A	within coordinates
Rr325071	regulatory region 325071	249 bp distal
Rr325072	regulatory region 325072	150 bp proximal
Tssr137487	transcription start site region 137487	1378 bp downstream
Tssr137488	transcription start site region 137488	1353 bp downstream
Tssr137489	transcription start site region 137489	300 bp upstream
Tssr137490	transcription start site region 137490	317 bp upstream
Tssr137491	transcription start site region 137491	341 bp upstream
Tssr137492	transcription start site region 137492	1479 bp upstream