rs50085516 SNP Detail

Summary

• ID
  rs50085516
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59700960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGA GAGAATTAGT CAGTCCATGC
  Y
  CTGTCCCTAC CGAAGAGGAA AGATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132241364	ENSMUSSNP2177623	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50085516					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59700960 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2968	CpG island 2968	within coordinates
Flcn	folliculin	118 bp upstream
Gm16062	predicted gene 16062	within coordinates
Rr448261	regulatory region 448261	1750 bp distal
Rr448262	regulatory region 448262	557 bp distal
Rr448263	regulatory region 448263	216 bp distal
Rr448264	regulatory region 448264	251 bp distal
Rr448265	regulatory region 448265	within coordinates
Tssr101863	transcription start site region 101863	1 bp downstream
Tssr101864	transcription start site region 101864	153 bp upstream
Tssr101865	transcription start site region 101865	175 bp upstream
Tssr108246	transcription start site region 108246	287 bp upstream
Tssr108247	transcription start site region 108247	90 bp upstream