ACTTCAGAGA TTTAAAGACA ATAAAGAATT GTCCACGGAG CCTGCAGGAA ACACTGCCTG GGCTGCAAGG AGGGGACCAG TTGGAATGAA TGAGCCAGGA C CAGAGCCGGG GCGGGGCGAA GAGAAGCGCA CAGCCTTGAA TGCTAGCTTT GGGCGCGCAC GGGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTG C = C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss147119760 | ENSMUSSNP1513200 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | C | ||
ss320439900 | CHEV_2_102499788 | CHEVERUD | SCREENING_POP | f | SNP | C | C | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs50086658 | SNP | C | C | C | C | C |
Location: Chr2:102489976 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi11978 | CpG island 11978 | within coordinates | ||||||
Gm57687 | predicted gene, 57687 | 69 bp upstream | ||||||
Rr561713 | regulatory region 561713 | 962 bp distal | ||||||
Rr561714 | regulatory region 561714 | 819 bp distal | ||||||
Rr561715 | regulatory region 561715 | 340 bp distal | ||||||
Rr561716 | regulatory region 561716 | within coordinates | ||||||
Slc1a2 | solute carrier family 1 (glial high affinity glutamate transporter), member 2 | within coordinates | ||||||
Tssr19098 | transcription start site region 19098 | 1392 bp downstream | ||||||
Tssr19099 | transcription start site region 19099 | 1320 bp downstream | ||||||
Tssr19100 | transcription start site region 19100 | 1051 bp downstream | ||||||
Tssr19101 | transcription start site region 19101 | 962 bp downstream | ||||||
Tssr19102 | transcription start site region 19102 | 936 bp downstream | ||||||
Tssr19103 | transcription start site region 19103 | 889 bp downstream | ||||||
Tssr19104 | transcription start site region 19104 | 867 bp downstream | ||||||
Tssr19105 | transcription start site region 19105 | 797 bp downstream | ||||||
Tssr19106 | transcription start site region 19106 | 779 bp downstream | ||||||
Tssr19107 | transcription start site region 19107 | 759 bp downstream | ||||||
Tssr19108 | transcription start site region 19108 | 723 bp downstream | ||||||
Tssr19109 | transcription start site region 19109 | 681 bp downstream | ||||||
Tssr19110 | transcription start site region 19110 | 399 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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