rs50086897 SNP Detail

Summary

• ID
  rs50086897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106521673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA TGTGATGCTC AGCTACATAG
  Y
  AAGTTTGAGG CAACCTTGGT ATACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136939149	ENSMUSSNP1416685	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323186516	CHEV_9_106546805	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50086897					SNP	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106521673 () rs orientation: forward

Symbol	Name	Function Class
Gm28111	predicted gene 28111	905 bp downstream
Grm2	glutamate receptor, metabotropic 2	60 bp downstream
Rr686373	regulatory region 686373	958 bp distal
Rr686374	regulatory region 686374	1081 bp distal
Rr686375	regulatory region 686375	469 bp distal
Rr686376	regulatory region 686376	1376 bp proximal