rs50087020 SNP Detail

Summary

• ID
  rs50087020
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATACTT GGAAATATAT
  TTGTACTTAA TATTGTTTTA AAATTGCACA TATGATATTA AGGGCAGCAG ACATTTTATG
  ACCATGCACT GTGTGTCTAG CATAATCCTA GGTGCAGGGT CATGGTAGGT GTGGAGTTGG
  ATGCATCCTT GTCCCTCCTG GAGCTCTCCG GCATACATAA TGCCATGCAG TTGGGCAAGG
  Y
  GATAAAATAT TCTTCTTTTA GCCGGGCATG GTGGTGCACA CCTTAAATCC CAGCACTTGG
  GAGGCAGAGG CAGGCAGATC TCTGAGTTTG AGGCCAGCCT GGTCTACAGA GTGAGTTCCA
  GGACAGCCAG GGCTACACAG AGAAACCCTG TCTCGTAAAA CTATATATAT ATATATATAT
  ATTCTCCTTT TACCAACCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132717870	ENSMUSSNP3642184	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323830644	CHEV_11_99915355	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50087020					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944867 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1926 bp downstream
Tssr104895	transcription start site region 104895	1776 bp downstream
Tssr104896	transcription start site region 104896	1749 bp downstream