rs50087149 SNP Detail

Summary

• ID
  rs50087149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92046880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGAGGC ATCTTGTGTC
  CCTCCTTGGC TTTATTTTTT CTTTTTCCTT CCCCATACTG TAGAATTAGT GCCCGCAGGG
  CCTGCTCAGG TGAGCTGCAA TCACGGTTAA TTGTCCCATG TCAGTATTTG TGAGCCCCAC
  GTGTTCTCGG GCTGCAGGGA GGGAACAGCA CAGGTGCTGA GCCCCCCTAA GGCTGACTGT
  R
  CAAGAAACCT GAAAACTGGC TGCGCACAAG TCCGTCATGC AGACAGGGCC CCCAAGCAAT
  GTGTGCCCAT GAGGAGAGCC TTCGGAGCCA AGAGGCATGG CCAGCTGCAT CCAAGTCCCT
  GTTAACAGGC ATCATGAAGC AGTGGGTGTG TGAAGATGCG CTAGGGAGTG AAGATCGGTG
  GATGAGTGCT ATCTCAGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60912131	NES16211102	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50087149					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60912131	NES16211102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92046880 () rs orientation: forward

Symbol	Name	Function Class
Fgd5	FYVE, RhoGEF and PH domain containing 5	within coordinates