rs50087186 SNP Detail

Summary

• ID
  rs50087186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:66372139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGCCAG GTAACTGTGG
  GGCGGAGCTT AGACAATGCT AACAGAACTA GCTGAGCTGA GCCAGGTAGT CCTAGAACTA
  AGAATTAGAT CCCCTGGTGA GCTCACAAAG AACTCTGTAG TAAACAACAG GTGTCAGTGA
  CCTGTTCAAC AAGACTGGTT TTGACCTCAG CCATTGTTTC GATCCAGTGG AGGAGAGCCA
  Y
  ACAACTGGCA CAGTGAGCTC CTGGTCCTTA GACGCCCATT TTAGGTTTAA GGTCAAAGAA
  AGGGAAGACA TCCAAGGACT AGGAGAAGCC CCAGCTATCC GCGGATCTGG AGGAAAGGGG
  AGGGGAGATG CCTGTCTTTA ACCTTGGAGT CCTGCAAATT TACATGGATT AAAACCTATC
  AACTCCATTA CCCCTGTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61174718	NES16683995	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50087186					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61174718	NES16683995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:66372139 () rs orientation: forward

Symbol	Name	Function Class
Gm3822	predicted gene 3822	within coordinates
Gm73278	predicted gene, 73278	within coordinates
Gm73415	predicted gene, 73415	251 bp upstream
Rr378070	regulatory region 378070	within coordinates
Rr612424	regulatory region 612424	807 bp proximal
Tssr46528	transcription start site region 46528	963 bp upstream
Tssr51198	transcription start site region 51198	251 bp upstream