rs50087470 SNP Detail

Summary

• ID
  rs50087470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32905023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCCCTC TCTCCCTCTC
  TCCCTCTCTC CCTCCTCCTC CTCCTCCTCT ACCTCCACCT CCTCTTCCTC CATATTACTG
  CCTATTTCCA CCCCATGGAT CTCTCCTCCT ACAAACAGCC TTCATTATTC ATATCCCTGG
  TCCATTATGC CTGATGGCCC CAACCTTCTT CCAACCTCCC AGTCTCACTG TCTGTCCATT
  Y
  GCCCCACAGG ATGCCACAGT TGGACCTGTC TTGGCTGGGA CTGAGGCTGG AGGCATCCTC
  ACCATGGCTG CTTTTGCTGC TGATCGGAGC TTCCTGGCTC TTGGCCCGTG TCCTGACTCA
  GACCTATATC TTCTACAGAA CATATCATCA TCTTTGTGAT TTCCCTCAAC CCCCCAAATG
  GAATTGGTTC TTGGGTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss62679299	NES17312448	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs50087470					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679299	NES17312448	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32905023 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	within coordinates
Rr339615	regulatory region 339615	within coordinates
Rr341335	regulatory region 341335	1578 bp proximal
Tssr143733	transcription start site region 143733	453 bp downstream
Tssr143734	transcription start site region 143734	434 bp downstream
Tssr143735	transcription start site region 143735	406 bp downstream
Tssr143736	transcription start site region 143736	372 bp downstream
Tssr143737	transcription start site region 143737	44 bp upstream