rs50087998 SNP Detail

Summary

• ID
  rs50087998
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCATTCAGCA GAATTGGACG GCCACCATTG CCAATCAGCA
  GAGCTTCATG ACCACCACTG AGTCTTCTAA AATATTCAGT TCAGATCCGG TGCTGGAAAC
  S
  TGCCCTTCTG TGTGAACTAC TGCTGCAAAG GTGACTATAT ATCGGGCTTT ACTTGACAAT
  TGTAAGCTGG ACTGTGGATA TCTCAGGACT CTGCCATTTC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52328620	NES15372066	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50087998					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52328620	NES15372066	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492243 () rs orientation: forward

Symbol	Name	Function Class
Rr464136	regulatory region 464136	1878 bp proximal
Rsad2	radical S-adenosyl methionine domain containing 2	502 bp downstream
Tssr112998	transcription start site region 112998	1497 bp upstream
Tssr112999	transcription start site region 112999	1544 bp upstream
Tssr113000	transcription start site region 113000	1668 bp upstream
Tssr115902	transcription start site region 115902	613 bp downstream
Tssr115903	transcription start site region 115903	945 bp downstream
Tssr115904	transcription start site region 115904	962 bp downstream
Tssr115905	transcription start site region 115905	1267 bp downstream
Tssr115906	transcription start site region 115906	1395 bp downstream
Tssr115907	transcription start site region 115907	1450 bp downstream
Tssr115908	transcription start site region 115908	1490 bp downstream
Tssr115909	transcription start site region 115909	1576 bp downstream
Tssr115910	transcription start site region 115910	1628 bp downstream
Tssr115911	transcription start site region 115911	1678 bp downstream
Tssr115912	transcription start site region 115912	1692 bp downstream
Tssr115913	transcription start site region 115913	1727 bp downstream
Tssr115914	transcription start site region 115914	1779 bp downstream
Tssr115915	transcription start site region 115915	1808 bp downstream
Tssr115916	transcription start site region 115916	1865 bp downstream
Tssr115917	transcription start site region 115917	1911 bp downstream
Tssr115918	transcription start site region 115918	1930 bp downstream
Tssr115919	transcription start site region 115919	1957 bp downstream
Tssr115920	transcription start site region 115920	1984 bp downstream