rs50088034 SNP Detail

Summary

• ID
  rs50088034
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGTCAA CATTAAAGAC
  GATTGTGCCA GCCAGCTCAC GAGGGAGGGG AGCGTTTATT TCTGAAACTT GCACTCTTAG
  AGGTGTTATT TCATGGCCTG TCTGCCCTGT CATTTTTGAG CCTGTGCTGA GATACATCAT
  GGAGAGAGTG CATAGTGGAG GAAACTGCTC ACTTCTCGCA TCTAGGAAGC AAAGAAGATA
  R
  CAAGAACCAT AAACCTAATA GTTCATTTAA GGGTGTATAC GCCACCATGA CATAACTGTT
  TTCTACTGAA CTCTGTCTCC TAAAGGTTCT TCTGATCTCC CACAGACTGG CTACCCAGCC
  TTTACCTCAT GGGCCTTTGG GAAGCACTGA AGATCTAAAT TATAACAATC TTGGAACATC
  AGCACTGAAT TTGGTGTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60980604	NES16142450	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50088034					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980604	NES16142450	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113749 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1438 bp upstream
Tssr2143	transcription start site region 2143	1522 bp upstream
Tssr2144	transcription start site region 2144	1374 bp upstream
Tssr2145	transcription start site region 2145	1350 bp upstream
Tssr2146	transcription start site region 2146	1337 bp upstream
Tssr2147	transcription start site region 2147	1292 bp upstream
Tssr71243	transcription start site region 71243	1508 bp upstream
Tssr71244	transcription start site region 71244	1483 bp upstream
Tssr71245	transcription start site region 71245	1468 bp upstream
Tssr71246	transcription start site region 71246	1439 bp upstream
Tssr71247	transcription start site region 71247	1411 bp upstream