rs50088825 SNP Detail

Summary

• ID
  rs50088825
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76498609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCGAGCC ATAGAGATAC
  CCTGTGGGTG AGTCTACACT GAGATTTCCC CTGCTTCCTA GACAGGCAAT CCCCCACAAG
  TCCAGCCAAG CAGGATGTAG TGGGCAAGAT CTCTACAGAG ATGCCGTCAG CAGGTGCCAG
  GAATCTATTT ACTCTGGCCC TCTAGCCTTG AAATCCACTA CTCTTCCTCC TTTAGTGGTT
  Y
  CTCATTCCTC AATGCCAACT CATGCCCCCT TCTAGAGCCC AATAACCTGA GGCTAGCACC
  CAGGGCGGGG GACTCACTCT CTGTTTGACT GAGCTGGTCC TGAATACGGA TAGTGGGGTA
  GGGGCTGCAG GCTCCACTTA GCTGCTGCTG GACCAAGGCA GGGGTCAGTT GGGCCCAGGC
  CTGAGGGCTC ACCCCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63562832	NES17021998	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50088825					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63562832	NES17021998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76498609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7242	CpG island 7242	966 bp distal
Gm62519	predicted gene, 62519	within coordinates
Rr311946	regulatory region 311946	1208 bp distal
Rr311947	regulatory region 311947	1791 bp proximal
Slc39a4	solute carrier family 39 (zinc transporter), member 4	within coordinates
Tssr135019	transcription start site region 135019	1694 bp upstream
Tssr135020	transcription start site region 135020	1447 bp upstream
Tssr135021	transcription start site region 135021	1437 bp upstream
Tssr135022	transcription start site region 135022	158 bp upstream
Tssr135023	transcription start site region 135023	42 bp upstream
Tssr135024	transcription start site region 135024	632 bp downstream
Tssr135025	transcription start site region 135025	1503 bp downstream