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rs50089036 SNP Detail
Summary
  • ID
    rs50089036
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr15:98850549 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AAAGT AGAAAATAAT ATTTTTATCC
    K
    ATGAATCTCT ACATACCACT AATAT                                      
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss63622745 NES17045892 PERLEGEN MM_PANEL2 f SNP T T T T T T G T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs50089036 SNP T T T T T T G T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss63622745 NES17045892 PERLEGEN MM_PANEL f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:98850549 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7685 CpG island 7685 321 bp proximal
Gm49450 predicted gene, 49450 within coordinates
Gm56698 predicted gene, 56698 1897 bp downstream
Rr370012 regulatory region 370012 550 bp upstream
Rr404613 regulatory region 404613 802 bp upstream
Rr509236 regulatory region 509236 99 bp proximal
Rr509237 regulatory region 509237 600 bp proximal
Rr509238 regulatory region 509238 873 bp proximal
Rr509239 regulatory region 509239 1025 bp proximal
Tssr132970 transcription start site region 132970 383 bp upstream
Tssr132971 transcription start site region 132971 1076 bp upstream
Tssr136333 transcription start site region 136333 1390 bp upstream
Tssr136334 transcription start site region 136334 807 bp downstream
Tssr136335 transcription start site region 136335 860 bp downstream
Tssr136336 transcription start site region 136336 873 bp downstream
Tssr136337 transcription start site region 136337 919 bp downstream
Tssr136338 transcription start site region 136338 929 bp downstream
Tssr136339 transcription start site region 136339 969 bp downstream
Tssr136340 transcription start site region 136340 994 bp downstream
Tssr136341 transcription start site region 136341 1020 bp downstream
Tuba1a tubulin, alpha 1A within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory