rs50090139 SNP Detail

Summary

• ID
  rs50090139
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44466342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGTCGC CCTGACCCTC
  CACTCTCTGC TTCAGGCTGG GGGCCCGGGC TCGGTCTCCT GAATCGGTCA GATCCGATGT
  GTCTTTCACA CCCGAAACCA GCTCGTCTCG TTCTCTCTCC CTGCTTCACG AATTTGCCAC
  CCGAGACCTC GTGGGTTAAG CCCATCGCCG AATGGCGCAA GCTAGCTTAG GCTTCATAGA
  S
  GAGTTCCAGG CAGCAACCGC GAGATAACGC TTCCCAAGTA CTTGTAGAGC GCTGTATACG
  CGCACAGATA TATCAGCTAT GGAAAGTAGG CCACGAAGTC CTAACCACGA GACTCTTCAA
  CATATTTTTG TTTGTTTTGT TTTAACATTT ATTGTGGTGG TCAGAGGAGA GCTAGCAGGA
  GTTGGTTCTC TGACCATGTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149123041	ENSMUSSNP4487451	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50090139					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44466342 () rs orientation: forward

Symbol	Name	Function Class
Atf5	activating transcription factor 5	260 bp upstream
Cpgi18994	CpG island 18994	within coordinates
Il4i1b	interleukin 4 induced 1B	within coordinates
Nup62	nucleoporin 62	within coordinates
Rr400297	regulatory region 400297	845 bp downstream
Tssr66426	transcription start site region 66426	978 bp downstream
Tssr66427	transcription start site region 66427	610 bp downstream
Tssr66428	transcription start site region 66428	584 bp downstream
Tssr66429	transcription start site region 66429	543 bp downstream
Tssr66430	transcription start site region 66430	512 bp downstream
Tssr72230	transcription start site region 72230	1261 bp upstream
Tssr72231	transcription start site region 72231	1236 bp upstream
Tssr72232	transcription start site region 72232	992 bp upstream
Tssr72233	transcription start site region 72233	310 bp upstream
Tssr72234	transcription start site region 72234	36 bp downstream