rs50090524 SNP Detail

Summary

• ID
  rs50090524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48409711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAAGGATT AAAAAGTCTT
  AGATAAAAAA GGCTAGAACC ACAGGAAATG AGGACACTGG CTTGAAAGAA GGCGCTAATT
  ACAACACCAG GCTCAAGTAC TCAGCACCCC AAAATCTAAA AGTACATCTG TGCTAGGGAG
  GACCCAGAGG GAGTAGACTC CATTTCTGTT CTGGTGTATA CATGGTCATC AGGATTCAGG
  Y
  TTTGGTTGAG AGATAATGTA ACAGGGTTTA TTGTGTTTCC TTTGGAAAGA AGAAAGCCTT
  CACATAAACT CTCCATTATT TTAAGTGAGA GTCAAGTGCA GAGTGTCAGA GTTATAGTGT
  GCCACAAAGA CTGTAGTATG GAAGAACAAC TAGCAACACC TTTGAAGTTA CCCCAAATGG
  ACAATTAAAT GTTCCCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394031	NES16775898	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50090524					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394031	NES16775898	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48409711 () rs orientation: forward

Symbol	Name	Function Class
Gm70225	predicted gene, 70225	within coordinates
Rr195326	regulatory region 195326	1511 bp distal
Rr206379	regulatory region 206379	1910 bp distal