rs50091331 SNP Detail

Summary

• ID
  rs50091331
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118271794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTAATCT GTATGCACTT
  GTGATTAATC CATCTTCACT GTGTTCTAGG CTGAAGGTAA ACAGGACGAC CAGGCAGGTG
  ACGGAGTGAT TAAGTCAGAC CCTTCAGGTA AGCCTTTATT TCATCCATGT GTTTAAAAGG
  AGACCATAAA ACTTCTCAAC CTGAAATCTG CCTTTTACTT ATAAAGACTT TATTCTGAAG
  Y
  AAATTGAAAT TATCCTTTAA ATAGTCTTTA TGGAAGTTTA AGGTTTTTTT CCTTTCGCTA
  TGTTAATTAT TCTTAAGAAG CATAAGCTCT GTCATTAGTA GAACAACGGT GATGATGGTC
  CCCTGGGGGC CCAAAGTGTT GGTGCTGTAA GGTTACCTCA AACCCAGCCT TCCTGGGGCT
  TTATCCAGTC CTAGCCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147300513	ENSMUSSNP4266845	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50091331					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118271794 () rs orientation: forward

Symbol	Name	Function Class
D2Mit276	DNA segment, Chr 2, Massachusetts Institute of Technology 276	754 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	within coordinates
Rr45942	regulatory region 45942	207 bp proximal