rs50092216 SNP Detail

Summary

• ID
  rs50092216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84344587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TGTTTTCCCC AATTTTTGCA GGGGGAAAAA AAAAAGTCTG
  GAGAGATGGC TCAGTTGTTA AGAGCCCTGA CTGCTCTTCC AGAAGACCAG GGTTCAATTC
  Y
  CAGCACCTGC ATAGCAGTTT ACAACTGTCT GTAACTCCAG TTCCAGGGGA CCTGACATAC
  TCACACAGAT ACAAGCAAAC TAGCAGTACA TGTGAAATAA A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss137927395	ENSMUSSNP5926027	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs50092216					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84344587 () rs orientation: forward

Symbol	Name	Function Class
Ptgr2	prostaglandin reductase 2	within coordinates
Rr469618	regulatory region 469618	1537 bp proximal
Tssr114334	transcription start site region 114334	1591 bp downstream