rs50092781 SNP Detail

Summary

• ID
  rs50092781
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14389510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGTGCTT GGCCTTGACT
  TAGCTACTGA TACACAAACA CAAGAAGGCA ATGGATGGCC ATTATTGACC CCGGCTCTTT
  AACTGACCAT GACATCATAT TTTCAGTAAA AACAAACCAA GACTTAACCT TCATTCTTTA
  TTTGGCCCAT CCATCATGTT TTTTAAAGAG TACACTGGAT TGTCTTGAAC ACCAGATGAT
  W
  TCCAAACAGG AGATACACAC AATATCTGTG TGCTTGGTTT GAGTGGAGAT GCAGTCTTCA
  CAAGGCATGG AGAGGTGGGG CCTTTCTGAG ATGGCTGGTG CTGAGCCTAT GTCCTAATGA
  ATGGCTGAGC CTGAGAGGCC TTCCAGACCC TGCCTCCACA GGAGGGTCCC CAGAAGTGAC
  CATTTAGAAG GCACAGGTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60542396	NES16557616	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs50092781					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60542396	NES16557616	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14389510 () rs orientation: forward

Symbol	Name	Function Class
Gm34426	predicted gene, 34426	393 bp upstream
Rr522471	regulatory region 522471	1909 bp distal
Rr522472	regulatory region 522472	1352 bp distal
Rr522473	regulatory region 522473	1916 bp proximal
Tssr142727	transcription start site region 142727	444 bp upstream
Tssr142728	transcription start site region 142728	459 bp upstream