rs50095231 SNP Detail

Summary

• ID
  rs50095231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98946964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCAAGAC AGGGTTTCTC TGTGTAGCCC TGGCTGTTCT
  GGAACTCACT CTGTAGACCA GGCTGGCCTC AAACTCAGAA ATCCACCTGC CTCTGCCTCC
  Y
  GAGTGCTGGG ATTGAAGGCA TGAGCCACCA CGCCCGGCAA GACCTAGTAT TTTTATTGAT
  GAGTATCTTG CTCTATATCT GGGCAGATAC TGAGCTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148463853	ENSMUSSNP5194303	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss325079702	CHEV_15_98879514	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50095231					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98946964 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	964 bp distal
Gm41399	predicted gene, 41399	within coordinates
Rr305848	regulatory region 305848	237 bp proximal
Rr311358	regulatory region 311358	1731 bp distal
Rr315589	regulatory region 315589	237 bp proximal