rs50099027 SNP Detail

Summary

• ID
  rs50099027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:89620453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCACACTT TGGTCTTCGT
  TCTTCTTCAG TTTCATGTGT TTTACAAATT GTATCTTATA TCTCGGGTAT ACTAAGTTTC
  TGGGCTAATA TCCACTTATC AGTGAATACA TATTGTGTGA GTTTCTTTGT GAATGTGTTA
  CCTCACTCAG GATGATGCCT TCCAGGTCCA TCCATTTGCC TAGGAATTTC ATAAATTCAT
  Y
  CCTTTTAATA GCTGAGTAGT ACTCCATTGT GTAAATGTAC CACATTTTTT TTATCCATTC
  CTCTGTTGAG GGGCATCTGG GTTCTTTCCA GCTTCTGGCT ATTATAAATA AGGCTGCTAT
  GAACATAGTG GAGCATGTGT CCTTCTTACC GGTTGGGACA TCTTCTGGAT ATATGTGGAG
  ATGTTTTATA AGGACTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147261996	ENSMUSSNP4165457	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50099027					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:89620453 () rs orientation: forward

Symbol	Name	Function Class
Bltp3b	bridge-like lipid transfer protein family member 3B	within coordinates
Tssr95182	transcription start site region 95182	1246 bp upstream