rs50099067 SNP Detail

Summary

• ID
  rs50099067
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:49316528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAACTCT AGCATGGAAT
  CCACCACCCT CCTTGGCTTC TGGGCACTAG GCATATACAT GGTACACAGA CATACATGCA
  GACCAAGTGC CTATACACAT AAAATAAATG TGTTTTTTAA CAGTAAGAAA CAGTCTAAAT
  GTTAAATGTT GTTGCTTACA AAGGGACTGA TGTTTTGAGC CAGACTTTCA ATCCGATGCA
  Y
  GGCTCTCAGA AGTGGAGAGT TCTGGTGTGC TTGTAACTCT GCTGCTTTGG GTGTGGTGCT
  AGTGATGATC GGTATGAGAC TTTCCCTGTT GGGCTCCAAG TATCTTTTCT GAAACACTTT
  TGCTTTCAGA TATCCTGATA ATTGTTTACC TCTTTCCCTT AAACTGTAAA GATGTAAACA
  TTAAGTGCTC TATTGCTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133169988	ENSMUSSNP1259640	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50099067					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:49316528 () rs orientation: forward

Symbol	Name	Function Class
Ccdc126	coiled-coil domain containing 126	within coordinates
Rr629883	regulatory region 629883	537 bp distal
Tssr60889	transcription start site region 60889	899 bp upstream