rs50099346 SNP Detail

Summary

• ID
  rs50099346
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172151978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCCAGTTC TTGCCCTGGG CCTGTGTCCT GTCTTCTCTA
  TTGGGTTTGT GCACCCTCCC CTCGGGGCAG ATCATTTTGT TCCTACCTCA GAATCTTCCC
  M
  AACCGGAATC CATCTCAGAA ACAGAGGAGT AAGCATTCAC TAATCAGAGA CCGGCTCTGA
  CATTGGAAGT CTGGCCCTGA GACATCTTGG GGTCATTGG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120009156	PARCsnp_1.18656	PARC_SEQ	INBRED	f	SNP		C	A
ss120012353	PARCsnp_1.08444	PARC_SEQ	INBRED	f	SNP		C	A
ss146187920	ENSMUSSNP1489871	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320124209	CHEV_1_174254542	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs50099346					SNP	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172151978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	1133 bp proximal
Gm36937	predicted gene, 36937	750 bp downstream
Gm70847	predicted gene, 70847	1869 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	97 bp proximal
Rr423525	regulatory region 423525	494 bp proximal
Rr423526	regulatory region 423526	684 bp proximal
Rr423527	regulatory region 423527	1379 bp proximal
Rr423528	regulatory region 423528	1486 bp proximal
Rr423529	regulatory region 423529	1901 bp proximal
Tssr15210	transcription start site region 15210	1807 bp downstream
Tssr15211	transcription start site region 15211	1817 bp downstream
Tssr15212	transcription start site region 15212	1837 bp downstream