rs50100859 SNP Detail

Summary

• ID
  rs50100859
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:110434718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA TTCTAGAGTA TGGTGACAAA
  C
  GAAACTGATG TGGATATCGT ATATA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss149050976	ENSMUSSNP1126068	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321640288	CHEV_5_110715871	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50100859					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:110434718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16226	CpG island 16226	101 bp distal
Pole	polymerase (DNA directed), epsilon	within coordinates
Pxmp2	peroxisomal membrane protein 2	682 bp upstream
Rr616864	regulatory region 616864	677 bp distal
Rr616865	regulatory region 616865	501 bp distal
Rr616866	regulatory region 616866	within coordinates
Tssr47885	transcription start site region 47885	461 bp downstream
Tssr52499	transcription start site region 52499	824 bp upstream
Tssr52500	transcription start site region 52500	800 bp upstream
Tssr52501	transcription start site region 52501	697 bp upstream
Tssr52502	transcription start site region 52502	675 bp upstream