rs50101790 SNP Detail

Summary

• ID
  rs50101790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126223291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCACATCAA TGCAGGTACG TGTTGAATGC AACCTAGATC
  ATTTTTTTTT TATTATTACG TCTCTCACAC TGGGTTCCAA ATGAATAAAT TTCTGTTGAA
  Y
  ATAGTCACCC CATTTGCAAT TTTAATATGT TTGTTCTTTT CTATGAATTT TAATTACTTA
  TTCCAAACTT AGTTGCTGTA ATTAGTCCAT CACAATTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147718186	ENSMUSSNP6805044	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323526643	CHEV_10_125824478	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50101790					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126223291 () rs orientation: forward

Symbol	Name	Function Class
Gm66003	predicted gene, 66003	within coordinates
Rr213439	regulatory region 213439	691 bp distal
Rr221931	regulatory region 221931	745 bp distal