rs50103252 SNP Detail

Summary

• ID
  rs50103252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:82270548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATGCAA ATTCCCCAGC
  CTATTGGTCA TTCCTGATGA AATGACTTAA CATCTGAATA ATTTTTTACA TCAATAGGGG
  ACTCTTTCAA ATTGTCTTTC CTGACCTTGA AAAACATACA GGTCCTTGAG AGAGCCAAGA
  TAATATGTGT CAATAGAAAC AAGGAAAGCA TGACATTACA AAGGATTTTT GCTACTGTTT
  Y
  CAGACATAGT TTTAACTTCT TGTAAGGCAA TCACAGTACA AGGGTGGAGA GGTAGATATA
  TAAACACATA CACAAGGCAA ACACAGGTGA TGTTGACATT CCTACTACTT TTTCTAAGCA
  GCATATTCTC TCAGAGATAA TATAAAGAGA ACAAATTCCT AATCCACAAG GAGGAAAAAT
  GATCTACGGA GTGTGGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	PWD/PhJ	WSB/EiJ
ss61190086	NES16699807	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	PWD/PhJ	WSB/EiJ
rs50103252					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61190086	NES16699807	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82270548 () rs orientation: forward

Symbol	Name	Function Class
1700008H02Rik	RIKEN cDNA 1700008H02 gene	1339 bp upstream
1700031L13Rik	RIKEN cDNA 1700031L13 gene	mRNA-UTR
Tssr51487	transcription start site region 51487	635 bp downstream
Tssr51488	transcription start site region 51488	665 bp downstream
Tssr51489	transcription start site region 51489	1946 bp downstream
Tssr51490	transcription start site region 51490	1960 bp downstream
Tssr51491	transcription start site region 51491	1990 bp downstream