rs50103585 SNP Detail

Summary

• ID
  rs50103585
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152950368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCACTAG TGGGGGAGGG
  GGACTGGGAA TCTTGGGAGG GCGGGTCAAA CCTTGGTGTC TGAGTAAGTC CTTCAAGGAC
  TGGTTAGCGC CCTTGAGGAC AGGGTTAGCA AAGAAATGCT GAAATTCTTT GGAGGTGAAT
  TTAGAGCAGG AGACAAGAGA GCCAGAGTGG GAGTTAGGCT CTTAGAGGGC GGAGTCGGGG
  Y
  ATTTGGGGGC GGGGTTTGCA TCACCCAGGG TGCGGCTAAG GCGCCCAGAT GGCCAGTGAG
  CGCCACTGGG TTGCGGCTCC CAGCTTGCAC TCCCCGCGGC GGCTCTCAGA CGGGTGGGAG
  GGGACCAAAG TCGCCCGTGA AGGGGGCTCT GACCCGTTCC GAGCGCCAAC GCAGCCTCTG
  TAGCCCGCAA GTCTTCGTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147984295	ENSMUSSNP4317361	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50103585					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152950368 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12479	CpG island 12479	within coordinates
Hck	hemopoietic cell kinase	20 bp upstream
Rr567550	regulatory region 567550	410 bp distal
Rr567551	regulatory region 567551	within coordinates
Rr567552	regulatory region 567552	59 bp proximal
Rr567553	regulatory region 567553	223 bp proximal
Tssr20863	transcription start site region 20863	775 bp downstream
Tssr20864	transcription start site region 20864	739 bp downstream
Tssr20865	transcription start site region 20865	26 bp upstream
Tssr20866	transcription start site region 20866	41 bp upstream
Tssr26882	transcription start site region 26882	570 bp downstream