rs50104113 SNP Detail

Summary

• ID
  rs50104113
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:55593313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAGGCA AAGGTCAGAT
  ATCAGACAAA ACAATTAACA GAAAGCATCT GGACTAAAAA AAAAATCTAG GAATCAAAGA
  CAAGATTGAG GAATTATTAC TTTCACATAG CGAAAAAAAA GGAAAAACAA ACAAACAAAC
  AACAACAACC ACAGCAGTCA TGACCACAAC TTTCAGGAAT GCAGGGACAT GATGAAGAGG
  Y
  CAATCATATG AACTTTTAGC TTAAAAGAAG GAACCAAGGC TCAGTCTAAC CACGTACACT
  CTAGTGCCTC TTCAGGTCAT CAGACAGCTC TAACGTGGAA GGGGCAGAAC AAAAGAAAAA
  TACTGGAAGC TGCGAGATGG CAGCTCCGAG TTAGGTCCAA AGGCACACCC ATCAGACTCT
  CAAGAGACGT CTTTGCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss134182128	ENSMUSSNP936560	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs50104113					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:55593313 () rs orientation: forward

Symbol	Name	Function Class
Ct45a	cancer/testis antigen 45	within coordinates
Tssr163412	transcription start site region 163412	1562 bp downstream
Tssr163413	transcription start site region 163413	1643 bp downstream
Tssr163414	transcription start site region 163414	1666 bp downstream
Tssr163415	transcription start site region 163415	1722 bp downstream
Tssr163416	transcription start site region 163416	1739 bp downstream
Tssr163417	transcription start site region 163417	1757 bp downstream