rs50105301 SNP Detail

Summary

• ID
  rs50105301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:15670474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAATAT TAAATAGTAT
  GTGGCACTCT CACATAGAGA GATTTTTTTT TTTAAACCAA AGTATATTTT CTTTTCAGTG
  GTCAGGAATA CCAATACACA CATGATTGTC AGAGAATTCT TTTTAGAACC AGTCTTCTAA
  AGATTGAAAG CTTTCATGGG TTCTGGAGTC TGCCCTTTTT TTGTGTGTGA ATCCACTGAT
  R
  AGAGTCCTGA AAAGTGTTCT GCCTTTACTC AGAGGAAGAC GTGCTCAGTG AACTCCACCA
  CGCTGTTTCC AGGCAGTACT AGTCAGAGCA TTCTTCCTGT GTGGGGCGAA GTACACCTTC
  CCAGAACTTC AGTACCATCT GTTTCTCTTT GTCCTGCTTC CTATAAAAGC ACTTTAACAT
  AGGAGTTTGA TTGGTTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61752965	NES17684098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50105301					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61752965	NES17684098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:15670474 () rs orientation: forward

Symbol	Name	Function Class
Gli3	GLI-Kruppel family member GLI3	within coordinates
Rr2093	regulatory region 2093	within coordinates
Rr2094	regulatory region 2094	706 bp proximal