rs50105938 SNP Detail

Summary

• ID
  rs50105938
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157402552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CGCGGTAAGA AATACCCGCT ATATTCAGGC TCGATCCCAG
  GAGGGAGGCG GGGCACTTGT GTGCTGTGAA ACTTTACAGT TCGCACAACA GAAAATTTTC
  M
  CCTTAAAAAA TTGCGCAATG CAGGAAATTT TCTTTTAAAT ACACTATGTA CACACATATA
  ACACTTGGGT GGGTGAAAAA GAAGTTAGAA AATGGCACTC C                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148103246	ENSMUSSNP5511482	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50105938					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157402552 () rs orientation: forward

Symbol	Name	Function Class
Blcap	bladder cancer associated protein	within coordinates
Cpgi12575	CpG island 12575	38 bp distal
Cpgi12576	CpG island 12576	828 bp proximal
Gm56190	predicted gene, 56190	1729 bp downstream
Nnat	neuronatin	within coordinates
Rr568541	regulatory region 568541	1762 bp distal
Rr568542	regulatory region 568542	1877 bp distal
Rr568543	regulatory region 568543	492 bp distal
Rr568544	regulatory region 568544	1715 bp proximal
Tssr721	transcription start site region 721	1809 bp downstream
Tssr21268	transcription start site region 21268	513 bp downstream
Tssr21269	transcription start site region 21269	28 bp downstream
Tssr21270	transcription start site region 21270	32 bp upstream
Tssr21271	transcription start site region 21271	133 bp upstream
Tssr21272	transcription start site region 21272	180 bp upstream
Tssr21273	transcription start site region 21273	843 bp upstream
Tssr21274	transcription start site region 21274	1085 bp upstream
Tssr21275	transcription start site region 21275	1140 bp upstream
Tssr21276	transcription start site region 21276	1241 bp upstream
Tssr21277	transcription start site region 21277	1270 bp upstream
Tssr21278	transcription start site region 21278	1305 bp upstream
Tssr21279	transcription start site region 21279	1397 bp upstream
Tssr21280	transcription start site region 21280	1476 bp upstream
Tssr21281	transcription start site region 21281	1523 bp upstream
Tssr21282	transcription start site region 21282	1648 bp upstream
Tssr21283	transcription start site region 21283	1662 bp upstream
Tssr27183	transcription start site region 27183	230 bp downstream
Tssr27184	transcription start site region 27184	337 bp downstream
Tssr27185	transcription start site region 27185	1220 bp downstream
Tssr27186	transcription start site region 27186	1347 bp downstream