rs50106590 SNP Detail

Summary

• ID
  rs50106590
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161628409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA ACACTGTTAA ACTCTTAGTT
  R
  AGATCTTTAT TGAATGGCTG AACAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145922776	ENSMUSSNP1585589	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320081688	CHEV_1_163730971	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50106590					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161628409 () rs orientation: forward

Symbol	Name	Function Class
Rr421849	regulatory region 421849	1574 bp distal
Rr421850	regulatory region 421850	733 bp distal
Rr421851	regulatory region 421851	554 bp proximal